Exonization Plots
Real-time screening for reads of alternative exonizations based on a multi-organ and -developmental stages from 313 human transcriptome RNAseq data. A collaboration with
the Henrik Kaessmann lab.
Exonization
Customized
Select a TE exon list
Zhang F. et al. 2022
Florea L. et al. 2021
Start!
Exonization shown cases were screened prior on the server, the whole process will finish in seconds.
Select search genome
GRCh38 - hg38
GRCh37 - hg19
Fill in a pair of coordinates
Fill in a name for the locus (without spaces)
Start!
The customized approach screens 313 RNAseq datasets for your input regions. This process takes about 1 min.
For the best results, key regions of alternative splicing should be carefully selected (see below)
How to select the fitting set of coordinates?
Main plot
How to use the tool?
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Save cpm table as tsv
Save main plot as pdf
Save UCSC custome track
Further Readings:
Zhang, Fengjun, et al. ExoPLOT: Representation of alternative splicing in human tissues and developmental stages with transposed element (TE) involvement. Genomics 114, 110434 (2022).
Cardoso-Moreira, Margarida, et al. Gene expression across mammalian organ development. Nature 571, 505-509 (2019).